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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1008
total RNA-seq
658
ChIP-seq
227
ATAC-seq
174
single cell RNA-seq
151
DNase-seq
87
RNA microarray
27
WGBS
22
pCHi-C
18
snATAC-seq
16
Hi-C
12
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1194
Transcription
658
DNA binding
399
DNA accessibility
37
DNA methylation
16
3D chromatin structure
Target of assay
409
histone modification
408
histone
213
broad histone mark
195
narrow histone mark
162
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
229
August, 2021
193
May, 2020
156
October, 2019
138
June, 2019
120
July, 2018
87
May, 2019
80
April, 2019
76
February, 2023
74
October, 2018
66
July, 2019
48
December, 2017
47
September, 2023
42
May, 2022
40
November, 2019
38
March, 2020
38
May, 2021
24
November, 2018
19
April, 2020
15
May, 2023
13
February, 2020
7
December, 2018
7
January, 2019
7
October, 2017
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1657
bam
1530
bigWig
1053
tsv
734
bed narrowPeak
445
bigBed narrowPeak
341
fastq
178
bed bed3+
177
bed broadPeak
151
txt
149
bigBed broadPeak
120
tagAlign
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
4
bed bed3
1
bedpe
Organism
2411
Homo sapiens
Biosample type
2420
tissue
828
primary cell
657
cell line
347
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
488
adipose tissue
454
pancreas
361
liver
299
kidney
273
heart
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2350
AMP
47
KPMP
19
LungMap
4
T1D
Genome assembly (visualization)
1616
GRCh38
1594
hg19
Lab
2160
AMP-T2D consortium
142
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
brain
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
2420 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
287
71
38
1
4
1
3
1
4
1
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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