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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1421
total RNA-seq
1357
ChIP-seq
522
ATAC-seq
366
single cell RNA-seq
175
DNase-seq
87
RNA microarray
84
snATAC-seq
55
pCHi-C
51
WGBS
31
Hi-C
14
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
51
DNA methylation
Date released
41
May, 2022
August, 2017
6
February, 2021
4
July, 2019
Available data
41
zippedFastqFolder
16
bam
bed bedMethyl
15
bigBed bedMethyl
15
bigWig
13
fastq
6
tsv
Organism
51
Homo sapiens
Biosample type
47
primary cell
4
tissue
Organ
47
epithelium
47
pancreas
2
heart
1
blood vessel
1
liver
1
vasculature
Project
47
HPAP
4
AMP
Lab
47
Klaus Kaestner, Upenn
4
AMP-T2D consortium
organ_slims!
brain
month_released!
August, 2017
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
51 results
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WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
2
aorta
1
right lobe of liver
1
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