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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
DNase-seq
60
ChIP-seq
2
ATAC-seq
Assay category
174
DNA accessibility
60
DNA binding
Target of assay
44
transcription factor
16
histone
16
histone modification
10
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
157
June, 2019
58
November, 2017
August, 2017
9
October, 2019
7
November, 2018
1
March, 2019
1
November, 2020
1
October, 2017
Available data
2867
bam
2675
bigWig
1484
tsv
1472
bed narrowPeak
1050
fastq
873
bigBed narrowPeak
234
bed broadPeak
232
bigBed broadPeak
205
bed bed3+
195
tagAlign
161
txt
153
zippedFastqFolder
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
23
bedpe bed3+
23
hic
11
bed bed3
8
csv
7
bed bedgraph
4
tar
3
cool
2
hdf5
2
ibed
1
bedpe
1
vcf
Organism
234
Homo sapiens
Biosample type
151
tissue
59
cell line
24
primary cell
Organ
78
kidney
63
liver
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
9
pancreas
8
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
234
AMP
Genome assembly (visualization)
220
hg19
217
GRCh38
Lab
232
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
organ_slims!
brain
gonad
month_released!
August, 2017
BIOSAMPLE
ASSAY
234 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
renal cortex interstitium
11
+ See 27 more…
cell line
HepG2
58
Panc1
1
primary cell
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
cardiac muscle cell
1
+ See 12 more…
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