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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
315
ChIP-seq
77
ATAC-seq
41
WGBS
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
Assay category
315
DNA binding
99
DNA accessibility
60
Transcription
41
DNA methylation
Target of assay
241
transcription factor
66
recombinant protein
56
control
34
RNA binding protein
15
chromatin remodeller
15
histone
15
histone modification
8
broad histone mark
7
narrow histone mark
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
315
November, 2017
228
October, 2019
204
February, 2023
200
May, 2022
188
June, 2019
168
July, 2018
December, 2017
92
May, 2019
90
July, 2019
86
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
February, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
October, 2017
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
339
fastq
338
bam
288
bigWig
287
bed narrowPeak
249
bigBed narrowPeak
134
zippedFastqFolder
58
bed broadPeak
58
bigBed broadPeak
12
tagAlign
7
txt
3
tar
1
bed bed3+
Organism
515
Homo sapiens
Biosample type
315
cell line
134
primary cell
66
tissue
Organ
355
liver
104
pancreas
brain
86
epithelium
6
vasculature
3
blood vessel
2
musculature of body
Project
381
AMP
134
HPAP
Genome assembly (visualization)
305
hg19
217
GRCh38
Lab
317
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
organ_slims!
brain
month_released!
December, 2017
BIOSAMPLE
ASSAY
515 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
cell line
HepG2
315
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
liver
20
20
islet of Langerhans
18
6
skeletal muscle tissue
1
1
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