Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
576
ChIP-seq
565
total RNA-seq
250
ATAC-seq
174
single cell RNA-seq
149
DNase-seq
86
RNA microarray
28
snATAC-seq
22
pCHi-C
21
WGBS
16
Hi-C
10
RRBS
10
small RNA-seq
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
749
Transcription
576
DNA binding
430
DNA accessibility
31
DNA methylation
16
3D chromatin structure
Target of assay
406
histone modification
405
histone
210
broad histone mark
195
narrow histone mark
126
control
46
transcription factor
21
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
228
August, 2021
227
August, 2017
193
May, 2020
154
October, 2019
137
June, 2019
120
July, 2018
101
February, 2021
93
February, 2023
87
May, 2019
80
April, 2019
66
May, 2022
56
July, 2019
51
October, 2018
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
37
March, 2020
23
November, 2018
19
April, 2020
14
May, 2023
11
February, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
October, 2017
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1135
bam
1053
bigWig
743
bed narrowPeak
596
tsv
399
bigBed narrowPeak
274
fastq
174
bed broadPeak
172
bed bed3+
157
txt
147
bigBed broadPeak
112
tagAlign
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
4
bed bed3
1
bedpe
Organism
1909
Homo sapiens
Biosample type
1917
tissue
1030
primary cell
662
cell line
254
in vitro differentiated cells
6
stem cell
Organ
connective tissue
505
pancreas
488
adipose tissue
313
heart
313
liver
299
kidney
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1820
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1140
GRCh38
1094
hg19
Lab
1565
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
10
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
brain
connective tissue
month_released!
December, 2017
BIOSAMPLE
ASSAY
1917 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
RRBS
small RNA-seq
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
70
298
67
1
7
4
3
1
4
1
liver
107
167
20
1
2
1
3
1
1
1
kidney
27
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
3
1
4
1
1
+ See 87 more…
See all biosamples
Download