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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
166
DNase-seq
97
ChIP-seq
2
ATAC-seq
Assay category
168
DNA accessibility
97
DNA binding
Target of assay
51
histone
51
histone modification
46
transcription factor
30
broad histone mark
21
narrow histone mark
6
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
153
June, 2019
58
November, 2017
41
August, 2017
7
November, 2018
3
October, 2019
1
March, 2019
1
November, 2020
1
October, 2017
Available data
2968
bam
2797
bigWig
1497
tsv
1488
bed narrowPeak
1337
fastq
839
bigBed narrowPeak
274
tagAlign
265
bed broadPeak
237
bigBed broadPeak
229
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
21
bedpe bed3+
20
hic
11
bed bed3
8
csv
7
bed bedgraph
3
cool
3
tar
2
ibed
1
bedpe
1
hdf5
1
vcf
Organism
259
Homo sapiens
Biosample type
172
tissue
59
cell line
33
primary cell
1
in vitro differentiated cells
Organ
78
kidney
63
liver
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
265
AMP
Genome assembly (visualization)
252
hg19
228
GRCh38
Lab
263
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
2
inconsistent assembly
organ_slims!
brain
blood vessel
month_released!
December, 2019
BIOSAMPLE
ASSAY
265 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
skeletal muscle tissue
13
+ See 26 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
cardiac muscle cell
1
+ See 11 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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