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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
73
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
399
Transcription
73
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
12
July, 2019
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
442
bam
425
bigWig
398
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
487
Homo sapiens
Biosample type
485
tissue
2
primary cell
1
in vitro differentiated cells
Organ
931
pancreas
787
liver
680
connective tissue
518
epithelium
488
adipose tissue
383
heart
352
kidney
brain
229
vasculature
223
blood vessel
159
bone element
139
artery
119
limb
89
musculature of body
69
blood
69
bodily fluid
60
eye
42
nerve
37
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
thymus
Project
488
AMP
Genome assembly (visualization)
426
hg19
424
GRCh38
Lab
488
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
brain
month_released!
February, 2020
March, 2020
BIOSAMPLE
ASSAY
488 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
3
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
6
12
1
1
1
omental fat pad
4
11
1
1
2
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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