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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
60
ChIP-seq
35
ATAC-seq
8
WGBS
3
DNase-seq
3
pCHi-C
Assay category
93
Transcription
60
DNA binding
38
DNA accessibility
8
DNA methylation
Target of assay
35
histone
35
histone modification
20
broad histone mark
20
control
15
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
May, 2024
36
February, 2023
10
April, 2019
8
July, 2019
6
May, 2019
5
June, 2019
February, 2020
3
March, 2020
2
February, 2021
Available data
95
tsv
78
bed narrowPeak
49
bigWig
29
bam
6
bed bedMethyl
6
bigBed bedMethyl
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
2
tagAlign
Organism
202
Homo sapiens
Biosample type
197
tissue
3
primary cell
2
cell line
Organ
287
pancreas
225
kidney
213
epithelium
202
heart
165
liver
brain
93
connective tissue
89
bone element
68
blood vessel
68
vasculature
63
adipose tissue
46
artery
26
eye
23
limb
21
musculature of body
20
lung
14
blood
14
bodily fluid
11
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
202
AMP
Genome assembly (visualization)
266
GRCh38
hg19
Lab
162
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
organ_slims!
brain
month_released!
February, 2020
assembly!
hg19
BIOSAMPLE
ASSAY
202 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
tissue
left cardiac atrium
18
40
coronary artery
2
35
heart left ventricle
18
6
4
1
heart right ventricle
17
2
2
1
right cardiac atrium
18
1
1
1
+ See 9 more…
primary cell
cardiac fibroblast
2
1
cell line
smooth muscle cell of the coronary artery
2
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