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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
4
RRBS
4
total RNA-seq
2
Hi-C
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
5
Transcription
4
DNA methylation
2
3D chromatin structure
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
63
bigWig
60
bed narrowPeak
52
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
5
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
1
txt
Organism
86
Homo sapiens
Biosample type
75
tissue
11
primary cell
Organ
922
pancreas
774
liver
662
connective tissue
478
adipose tissue
476
epithelium
360
heart
313
kidney
brain
177
vasculature
172
blood vessel
159
bone element
112
artery
86
musculature of body
69
blood
69
bodily fluid
48
limb
39
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
86
AMP
Genome assembly (visualization)
68
hg19
48
GRCh38
Lab
86
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
organ_slims!
brain
month_released!
July, 2019
October, 2019
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
DNase-seq
RRBS
total RNA-seq
Hi-C
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
muscle of leg
7
13
muscle of arm
17
psoas muscle
2
2
1
forelimb muscle
1
+ See 3 more…
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
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