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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
total RNA-seq
14
small RNA-seq
13
RRBS
12
WGBS
7
ChIP-seq
5
ATAC-seq
5
Hi-C
1
FAIRE-seq
Assay category
54
Transcription
25
DNA methylation
7
DNA binding
6
DNA accessibility
5
3D chromatin structure
Target of assay
4
control
3
transcription factor
Date released
619
February, 2021
411
August, 2017
378
May, 2021
340
May, 2020
275
August, 2021
200
May, 2022
198
February, 2023
198
October, 2019
188
June, 2019
168
July, 2018
92
May, 2019
90
July, 2019
80
April, 2019
76
October, 2018
73
September, 2018
67
December, 2017
59
September, 2020
51
March, 2020
49
April, 2018
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
25
November, 2018
19
April, 2020
16
January, 2021
15
May, 2023
13
February, 2020
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
7
October, 2017
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
76
bam
72
bigWig
54
tsv
21
bed bedMethyl
21
bigBed bedMethyl
9
bed narrowPeak
7
fastq
4
bigBed narrowPeak
1
bed bed3+
1
hdf5
Organism
97
Homo sapiens
Biosample type
73
tissue
cell line
24
primary cell
Organ
25
heart
brain
18
connective tissue
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
7
spleen
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
97
AMP
Genome assembly (visualization)
77
hg19
70
GRCh38
Lab
97
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
brain
audit.ERROR.category!
inconsistent control
biosample_type!
cell line
BIOSAMPLE
ASSAY
97 results
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total RNA-seq
small RNA-seq
RRBS
WGBS
ChIP-seq
ATAC-seq
Hi-C
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
spleen
7
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 20 more…
primary cell
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
+ See 14 more…
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