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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
409
ChIP-seq
Assay category
409
DNA binding
Target of assay
283
transcription factor
77
control
66
recombinant protein
46
histone
46
histone modification
38
RNA binding protein
23
broad histone mark
23
narrow histone mark
18
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
315
November, 2017
228
October, 2019
204
February, 2023
200
May, 2022
188
June, 2019
168
July, 2018
94
December, 2017
92
May, 2019
90
July, 2019
86
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
February, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
October, 2017
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
409
fastq
408
bam
340
bigWig
321
bed narrowPeak
299
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
15
bed bed3+
12
tagAlign
3
tar
Organism
409
Homo sapiens
Biosample type
315
cell line
48
tissue
43
in vitro differentiated cells
3
stem cell
Organ
378
liver
brain
25
epithelium
13
embryo
6
vasculature
3
blood vessel
Project
409
AMP
Genome assembly (visualization)
343
hg19
294
GRCh38
Lab
409
AMP-T2D consortium
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
11
missing controlled_by
Audit category:
32
inconsistent control read length
4
inconsistent control run_type
organ_slims!
brain
BIOSAMPLE
ASSAY
409 results
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Clear Filters
ChIP-seq
cell line
HepG2
315
tissue
liver
38
right lobe of liver
10
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
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stem cell
hESC
3
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