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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
snATAC-seq
23
ATAC-seq
1
DNase-seq
Assay category
567
Transcription
51
DNA accessibility
8
DNA binding
6
DNA methylation
Date released
157
June, 2019
104
February, 2023
100
May, 2020
99
May, 2022
82
August, 2021
49
February, 2021
34
May, 2021
32
October, 2019
26
November, 2019
16
January, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
8
November, 2018
7
August, 2020
7
October, 2017
6
July, 2019
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
27
fastq
20
bam
20
bed narrowPeak
4
bed bedgraph
2
bed bed3
2
bigWig
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
51
Homo sapiens
Biosample type
30
primary cell
9
cell line
8
tissue
4
in vitro differentiated cells
Organ
8
artery
8
blood vessel
8
bone element
8
heart
8
skeleton
8
vasculature
7
connective tissue
6
limb
1
liver
Project
27
HPAP
24
AMP
Genome assembly (visualization)
24
hg19
20
GRCh38
Lab
27
Klaus Kaestner, Upenn
24
AMP-T2D consortium
Audit category:
27
audit script error
1
inconsistent replicate
organ_slims!
brain
BIOSAMPLE
ASSAY
51 results
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snATAC-seq
ATAC-seq
DNase-seq
primary cell
Langerhans cell
27
osteoblast
2
1
cell line
smooth muscle cell of the coronary artery
8
HepG2
1
tissue
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
proximal epiphysis
1
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in vitro differentiated cells
adipocyte
4
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