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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
10
MeRIP-seq
6
total RNA-seq
1
ATAC-seq
1
DNase-seq
Assay category
74
DNA binding
6
Transcription
2
DNA accessibility
Target of assay
34
control
30
histone
30
histone modification
19
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
5
nucleotide modification
Date released
715
February, 2021
411
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
315
November, 2017
228
October, 2019
204
February, 2023
200
May, 2022
188
June, 2019
168
July, 2018
94
December, 2017
92
May, 2019
90
July, 2019
86
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
February, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
October, 2017
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
82
bam
60
fastq
52
bigWig
47
bed narrowPeak
46
bigBed narrowPeak
6
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
92
Homo sapiens
Biosample type
78
tissue
8
primary cell
6
cell line
Organ
63
pancreas
29
connective tissue
23
adipose tissue
8
epithelium
Project
92
AMP
Genome assembly (visualization)
53
GRCh38
53
hg19
Lab
82
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
1
inconsistent control read length
organ_slims!
brain
BIOSAMPLE
ASSAY
92 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
DNase-seq
tissue
body of pancreas
33
endocrine pancreas
16
subcutaneous adipose tissue
12
omental fat pad
11
islet of Langerhans
4
+ See 1 more…
primary cell
osteoblast
4
1
1
pancreatic acinar cell
2
cell line
EndoC_BH1
6
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