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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
224
ATAC-seq
175
DNase-seq
Assay category
1389
Transcription
1095
DNA binding
399
DNA accessibility
17
DNA methylation
2
3D chromatin structure
Date released
157
June, 2019
74
August, 2021
35
February, 2023
26
November, 2019
14
October, 2019
14
September, 2018
13
May, 2021
11
May, 2023
10
February, 2021
7
August, 2017
7
August, 2020
7
November, 2018
7
October, 2017
5
July, 2019
5
September, 2017
3
September, 2020
2
March, 2019
2
November, 2020
Available data
375
bed narrowPeak
276
bam
224
bigWig
199
bigBed narrowPeak
174
bed broadPeak
173
bigBed broadPeak
172
bed bed3+
64
xls
50
fastq
2
bed bed3
Organism
399
Homo sapiens
Biosample type
298
tissue
71
primary cell
18
in vitro differentiated cells
12
cell line
Organ
154
kidney
77
heart
67
pancreas
57
vasculature
55
blood vessel
51
epithelium
49
artery
44
limb
brain
33
musculature of body
18
ureter
14
connective tissue
8
bone element
8
liver
skeleton
5
adipose tissue
4
eye
3
nerve
2
spleen
2
vein
Project
389
AMP
10
HPAP
Genome assembly (visualization)
417
hg19
399
GRCh38
Lab
311
AMP-T2D consortium
75
Katalin Susztak, Upenn
10
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
15
inconsistent ontology term
1
inconsistent replicate
organ_slims!
brain
skeleton
BIOSAMPLE
ASSAY
399 results
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Clear Filters
ATAC-seq
DNase-seq
tissue
kidney
75
13
coronary artery
36
2
islet of Langerhans
22
1
heart
18
muscle of arm
17
+ See 30 more…
primary cell
monocyte
13
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 19 more…
in vitro differentiated cells
neural progenitor cell
10
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
adipocyte
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
1
HepG2
1
Panc1
1
glomerular visceral epithelial cell
1
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