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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
ChIP-seq
5
DNase-seq
5
total RNA-seq
4
Hi-C
4
single cell RNA-seq
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
62
DNA binding
9
Transcription
7
DNA accessibility
4
3D chromatin structure
2
DNA methylation
Target of assay
49
histone
49
histone modification
31
broad histone mark
18
narrow histone mark
11
control
2
RNA binding protein
2
transcription factor
Date released
45
May, 2019
21
October, 2019
7
July, 2019
4
August, 2021
4
March, 2020
3
June, 2019
1
February, 2020
Available data
75
bam
61
bigWig
53
bed narrowPeak
52
bigBed narrowPeak
10
tsv
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3+
3
hic
2
bedpe bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
tar
Organism
85
Homo sapiens
Biosample type
60
tissue
25
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
brain
236
vasculature
230
blood vessel
159
bone element
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
85
AMP
Genome assembly (visualization)
62
hg19
57
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
brain
skeleton
artery
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
single cell RNA-seq
WGBS
ATAC-seq
FAIRE-seq
pCHi-C
tissue
aorta
13
1
1
4
2
1
ascending aorta
16
1
2
thoracic aorta
16
2
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
smooth muscle cell of the brain vasculature
1
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