Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
DNase-seq
64
ATAC-seq
27
ChIP-seq
1
FAIRE-seq
Assay category
134
DNA accessibility
27
DNA binding
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
7
recombinant protein
7
transcription factor
Date released
68
June, 2019
64
August, 2021
18
April, 2019
10
October, 2019
1
July, 2019
Available data
161
bed narrowPeak
113
bam
103
bigWig
88
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
18
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
161
Homo sapiens
Biosample type
153
tissue
primary cell
8
cell line
Organ
435
liver
brain
185
heart
161
kidney
146
pancreas
112
blood vessel
112
vasculature
92
limb
74
artery
58
connective tissue
54
blood
54
bodily fluid
51
musculature of body
45
epithelium
30
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
8
bone element
8
skeleton
1
pituitary gland
Project
161
AMP
Genome assembly (visualization)
160
GRCh38
96
hg19
Lab
97
AMP-T2D consortium
64
Katalin Susztak, Upenn
Audit category:
7
inconsistent ontology term
organ_slims!
brain
biosample_type!
primary cell
BIOSAMPLE
ASSAY
161 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ATAC-seq
ChIP-seq
FAIRE-seq
tissue
kidney
13
64
20
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 4 more…
cell line
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
glomerular visceral epithelial cell
1
See all biosamples
Download