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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
ChIP-seq
127
total RNA-seq
25
ATAC-seq
4
GRO-seq
4
pCHi-C
2
single cell RNA-seq
Assay category
131
DNA binding
129
Transcription
25
DNA accessibility
3D chromatin structure
Target of assay
75
histone
75
histone modification
39
narrow histone mark
36
broad histone mark
29
control
27
transcription factor
7
RNA binding protein
1
chromatin remodeller
Date released
131
May, 2021
43
December, 2017
39
February, 2018
38
August, 2021
18
February, 2021
6
March, 2020
5
November, 2019
4
January, 2018
4
October, 2019
3
February, 2023
2
December, 2019
Available data
232
bam
202
bigWig
126
tsv
87
bed narrowPeak
86
fastq
26
tagAlign
14
bigBed narrowPeak
12
bed bed3+
3
bed bedgraph
3
txt
2
bedpe bed3+
2
ibed
Organism
293
Homo sapiens
Biosample type
2174
tissue
1040
primary cell
658
cell line
293
in vitro differentiated cells
9
stem cell
Organ
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
293
AMP
Genome assembly (visualization)
220
hg19
211
GRCh38
4
hg18
Lab
243
AMP-T2D consortium
47
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
107
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
organ_slims!
connective tissue
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
293 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
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