Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
25
ATAC-seq
4
GRO-seq
4
pCHi-C
2
single cell RNA-seq
Assay category
DNA binding
129
Transcription
25
DNA accessibility
3D chromatin structure
Date released
88
May, 2021
18
February, 2021
17
August, 2021
15
February, 2018
6
March, 2020
5
November, 2019
4
January, 2018
4
October, 2019
3
February, 2023
2
December, 2019
Available data
139
bam
134
bigWig
126
tsv
19
bed narrowPeak
19
fastq
3
bed bedgraph
3
txt
2
bedpe bed3+
2
ibed
Organism
162
Homo sapiens
Biosample type
1381
tissue
773
primary cell
174
cell line
162
in vitro differentiated cells
6
stem cell
Organ
connective tissue
7
embryo
2
epithelium
1
adipose tissue
1
heart
Project
162
AMP
Genome assembly (visualization)
149
hg19
139
GRCh38
4
hg18
Lab
149
AMP-T2D consortium
10
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
100
inconsistent ontology term
2
audit script error
organ_slims!
connective tissue
assay_slims!
3D chromatin structure
DNA binding
BIOSAMPLE
ASSAY
162 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
GRO-seq
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
neural progenitor cell
7
10
embryonic stem cell
7
6
1
induced pluripotent stem cell
9
+ See 21 more…
See all biosamples
Download