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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
2
ATAC-seq
Assay category
199
DNA accessibility
DNA binding
Date released
181
June, 2019
8
November, 2018
7
October, 2019
1
August, 2017
1
March, 2019
1
October, 2017
Available data
1323
bam
1284
bigWig
1122
tsv
490
fastq
475
bed narrowPeak
228
bigBed narrowPeak
204
bed bed3+
199
bed broadPeak
197
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
199
Homo sapiens
Biosample type
176
tissue
22
primary cell
1
cell line
Organ
78
kidney
36
limb
33
musculature of body
32
brain
30
heart
18
ureter
16
epithelium
11
vasculature
9
blood vessel
connective tissue
9
pancreas
5
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
199
AMP
Genome assembly (visualization)
197
GRCh38
176
hg19
Lab
197
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
organ_slims!
connective tissue
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
199 results
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Clear Filters
DNase-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
primary cell
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
+ See 14 more…
cell line
Panc1
1
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