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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
ATAC-seq
74
total RNA-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
180
Transcription
80
DNA accessibility
DNA binding
3
3D chromatin structure
1
DNA sequencing
Date released
291
May, 2020
271
August, 2021
252
February, 2021
232
May, 2021
200
May, 2022
191
February, 2023
181
June, 2019
166
July, 2018
107
August, 2017
90
July, 2019
69
October, 2019
59
March, 2020
59
September, 2020
47
April, 2018
47
November, 2019
47
September, 2023
41
September, 2018
23
February, 2020
19
April, 2020
17
November, 2018
16
January, 2021
15
February, 2018
14
May, 2023
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
7
October, 2017
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
October, 2022
3
August, 2018
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
123
tsv
74
bed narrowPeak
64
xls
57
txt
25
bam
15
bigWig
2
bedpe bed3+
2
hic
1
vcf
Organism
271
Homo sapiens
Biosample type
228
tissue
26
cell line
17
in vitro differentiated cells
Organ
130
kidney
92
heart
13
liver
8
embryo
6
blood vessel
6
vasculature
connective tissue
4
pancreas
2
artery
2
epithelium
1
adipose tissue
Project
271
AMP
Genome assembly (visualization)
89
GRCh38
27
hg19
Lab
128
Katalin Susztak, Upenn
125
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
organ_slims!
connective tissue
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
271 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 10 more…
cell line
HepG2
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
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