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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
DNA binding
36
DNA accessibility
24
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
3
control
Date released
29
June, 2019
17
July, 2019
12
February, 2020
2
March, 2020
2
November, 2018
2
October, 2019
1
February, 2023
1
October, 2017
Available data
48
bigWig
46
bam
33
bed bed3+
32
bed narrowPeak
32
bigBed narrowPeak
31
bed broadPeak
31
bigBed broadPeak
26
tsv
3
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
Organism
66
Homo sapiens
Biosample type
56
tissue
10
primary cell
Organ
728
pancreas
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
66
AMP
Genome assembly (visualization)
45
GRCh38
39
hg19
Lab
66
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
connective tissue
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
66 results
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DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
14
1
1
1
frontal cortex
2
2
1
1
cerebellum (Hemisphere)
1
1
1
1
Ammon's horn
1
1
1
caudate nucleus
1
1
+ See 20 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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