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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1718
ChIP-seq
1053
total RNA-seq
506
ATAC-seq
365
single cell RNA-seq
203
DNase-seq
86
RNA microarray
84
snATAC-seq
69
WGBS
52
pCHi-C
33
Hi-C
20
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
69
DNA methylation
Date released
41
May, 2022
12
July, 2019
7
November, 2018
6
February, 2021
3
August, 2017
Available data
41
zippedFastqFolder
16
bam
15
bed bedMethyl
15
bigBed bedMethyl
15
bigWig
14
fastq
6
tsv
Organism
69
Homo sapiens
Biosample type
47
primary cell
21
tissue
1
cell line
Organ
51
pancreas
47
epithelium
8
heart
6
adipose tissue
connective tissue
5
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
47
HPAP
22
AMP
Genome assembly (visualization)
15
GRCh38
Lab
47
Klaus Kaestner, Upenn
22
AMP-T2D consortium
organ_slims!
connective tissue
assay_slims!
DNA sequencing
assay_title!
CRISPR genome editing followed by DNA sequencing
BIOSAMPLE
ASSAY
69 results
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WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
liver
3
aorta
2
body of pancreas
2
heart right ventricle
2
+ See 6 more…
cell line
HepG2
1
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