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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
22
ATAC-seq
5
DNase-seq
5
WGBS
4
Hi-C
2
RRBS
2
STARR-seq
2
pCHi-C
1
whole genome sequencing assay
Assay category
552
DNA binding
Transcription
27
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
54
August, 2017
53
November, 2018
51
May, 2020
26
August, 2021
20
May, 2022
6
October, 2019
3
July, 2019
February, 2021
2
March, 2020
1
December, 2018
1
June, 2019
Available data
517
bam
460
fastq
459
bigWig
439
bed narrowPeak
357
bigBed narrowPeak
86
tagAlign
62
bed broadPeak
62
bigBed broadPeak
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
2
tsv
1
hdf5
1
vcf
Organism
595
Homo sapiens
Biosample type
385
cell line
187
tissue
15
in vitro differentiated cells
8
primary cell
Organ
596
liver
461
pancreas
317
epithelium
262
brain
226
kidney
213
heart
connective tissue
155
vasculature
149
blood vessel
109
limb
90
adipose tissue
87
musculature of body
69
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
11
lung
5
bone element
5
gonad
5
ovary
4
skeleton
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
595
AMP
Genome assembly (visualization)
460
hg19
367
GRCh38
Lab
553
AMP-T2D consortium
22
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
connective tissue
assay_slims!
Transcription
month_released!
February, 2021
BIOSAMPLE
ASSAY
595 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
STARR-seq
pCHi-C
whole genome sequencing assay
cell line
HepG2
378
1
2
2
1
1
tissue
liver
145
20
2
3
1
1
1
right lobe of liver
10
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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