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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
431
ATAC-seq
122
DNase-seq
78
snATAC-seq
4
FAIRE-seq
Assay category
1626
DNA binding
1312
Transcription
635
DNA accessibility
86
DNA methylation
32
3D chromatin structure
1
DNA sequencing
Date released
103
June, 2019
100
May, 2020
99
May, 2022
95
February, 2023
44
February, 2021
34
May, 2021
27
October, 2019
25
November, 2019
16
January, 2021
14
September, 2018
10
April, 2020
10
August, 2021
9
August, 2017
9
November, 2018
7
August, 2020
7
July, 2019
7
October, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
September, 2020
2
January, 2018
1
August, 2022
Available data
331
bed narrowPeak
295
bam
252
bigWig
148
bigBed narrowPeak
121
bed broadPeak
119
bed bed3+
119
bigBed broadPeak
98
fastq
60
zippedFastqFolder
14
tsv
6
bed bed3
4
txt
3
bed bedgraph
1
tar
Organism
634
Homo sapiens
Biosample type
312
tissue
268
primary cell
30
cell line
25
in vitro differentiated cells
Organ
173
pancreas
kidney
123
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
499
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
347
hg19
273
GRCh38
Lab
448
AMP-T2D consortium
97
Klaus Kaestner, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
3
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
41
inconsistent ontology term
29
audit script error
1
inconsistent replicate
organ_slims!
connective tissue
kidney
BIOSAMPLE
ASSAY
635 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
islet of Langerhans
68
1
7
1
coronary artery
36
2
liver
20
2
heart
18
retina
15
3
+ See 47 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 46 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
in vitro differentiated cells
neural progenitor cell
10
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
Progenitor cell of Hypothalamus (neural progenitor cell)
1
cardiac precursors (cardiac muscle cell)
1
+ See 2 more…
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