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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
84
RNA microarray
31
DNase-seq
21
total RNA-seq
ATAC-seq
4
small RNA-seq
3
pCHi-C
3
single cell RNA-seq
2
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
218
DNA binding
32
DNA accessibility
28
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
84
February, 2021
29
June, 2019
28
May, 2019
16
July, 2019
15
October, 2017
12
February, 2020
4
February, 2023
2
March, 2020
2
November, 2018
1
May, 2021
Available data
240
bam
218
bigWig
202
bed narrowPeak
126
bigBed narrowPeak
118
tagAlign
88
txt
46
bed broadPeak
37
bigBed broadPeak
33
bed bed3+
26
tsv
20
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
tagAlign bed3+
Organism
369
Homo sapiens
Biosample type
349
tissue
20
primary cell
Organ
794
pancreas
768
liver
connective tissue
485
adipose tissue
421
epithelium
346
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
368
AMP
1
T1D
Genome assembly (visualization)
214
GRCh38
161
hg19
Lab
368
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
87
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
connective tissue
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
369 results
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ChIP-seq
RNA microarray
DNase-seq
total RNA-seq
small RNA-seq
pCHi-C
single cell RNA-seq
Hi-C
RRBS
FAIRE-seq
tissue
bone element
84
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
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primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
cerebellar granule cell
2
Purkinje cell
1
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