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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
89
ChIP-seq
69
total RNA-seq
47
ATAC-seq
27
DNase-seq
8
WGBS
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
163
Transcription
89
DNA binding
74
DNA accessibility
9
DNA methylation
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
18
control
11
transcription factor
5
RNA binding protein
Date released
92
August, 2021
66
February, 2021
57
April, 2019
36
February, 2023
27
June, 2019
22
July, 2019
21
May, 2019
7
October, 2019
5
March, 2020
3
February, 2020
2
May, 2021
Available data
200
bam
175
bigWig
165
tsv
145
bed narrowPeak
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
Organism
338
Homo sapiens
Biosample type
270
tissue
66
cell line
2
primary cell
Organ
937
pancreas
787
liver
connective tissue
516
epithelium
491
adipose tissue
353
kidney
350
heart
283
brain
231
vasculature
225
blood vessel
159
bone element
141
artery
118
limb
90
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
338
AMP
Genome assembly (visualization)
217
GRCh38
176
hg19
Lab
338
AMP-T2D consortium
organ_slims!
connective tissue
assay_title!
Hi-C
BIOSAMPLE
ASSAY
338 results
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Clear Filters
single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
35
3
2
3
4
1
1
coronary artery
5
1
36
2
heart
1
14
4
18
1
1
heart right ventricle
17
13
1
1
2
1
right cardiac atrium
18
6
1
1
+ See 10 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
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