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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1608
ChIP-seq
1059
total RNA-seq
506
ATAC-seq
358
single cell RNA-seq
195
DNase-seq
86
RNA microarray
84
snATAC-seq
62
WGBS
52
pCHi-C
33
Hi-C
20
RRBS
15
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
62
DNA methylation
Date released
41
May, 2022
12
July, 2019
November, 2018
6
February, 2021
3
August, 2017
Available data
41
zippedFastqFolder
9
bam
8
bed bedMethyl
8
bigBed bedMethyl
8
bigWig
7
fastq
6
tsv
Organism
62
Homo sapiens
Biosample type
47
primary cell
15
tissue
Organ
47
epithelium
47
pancreas
8
heart
6
adipose tissue
connective tissue
4
liver
2
blood vessel
2
vasculature
1
limb
1
musculature of body
Project
47
HPAP
15
AMP
Genome assembly (visualization)
8
GRCh38
Lab
47
Klaus Kaestner, Upenn
15
AMP-T2D consortium
organ_slims!
connective tissue
month_released!
November, 2018
BIOSAMPLE
ASSAY
62 results
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WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
liver
3
aorta
2
heart right ventricle
2
heart
1
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