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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
261
ChIP-seq
174
single cell RNA-seq
133
total RNA-seq
99
ATAC-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
16
Hi-C
11
RRBS
7
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
307
Transcription
261
DNA binding
132
DNA accessibility
18
DNA methylation
16
3D chromatin structure
Target of assay
160
control
102
histone
102
histone modification
61
narrow histone mark
41
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
164
August, 2021
93
February, 2021
85
August, 2017
79
October, 2019
66
May, 2022
59
February, 2023
47
September, 2023
31
May, 2020
30
March, 2020
25
November, 2017
23
February, 2020
23
May, 2019
19
April, 2020
16
April, 2019
16
July, 2019
12
December, 2017
11
October, 2018
9
October, 2017
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
March, 2019
3
May, 2023
2
May, 2021
1
August, 2022
1
January, 2018
1
January, 2019
1
November, 2019
Available data
185
bam
157
txt
156
tsv
114
tagAlign
99
bed narrowPeak
77
fastq
57
bigWig
21
bed broadPeak
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
5
bed bed3
5
bigBed narrowPeak
1
bed bed3+
1
bedpe
Organism
849
Homo sapiens
Biosample type
851
tissue
545
primary cell
198
cell line
86
in vitro differentiated cells
6
stem cell
Organ
134
kidney
123
liver
122
heart
119
pancreas
92
bone element
connective tissue
66
adipose tissue
62
brain
53
eye
40
musculature of body
28
blood vessel
28
vasculature
26
limb
20
lung
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
756
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
GRCh38
1273
hg19
Lab
617
AMP-T2D consortium
67
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
organ_slims!
connective tissue
assembly!
GRCh38
BIOSAMPLE
ASSAY
851 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
45
32
46
7
4
3
1
1
4
kidney
7
64
49
6
1
1
1
liver
70
1
20
20
1
1
1
3
bone element
84
heart left ventricle
7
18
1
1
1
2
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