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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
19
ChIP-seq
3
Hi-C
3
pCHi-C
3
total RNA-seq
2
WGBS
1
RRBS
Assay category
96
Transcription
19
DNA binding
3
3D chromatin structure
3
DNA methylation
Target of assay
18
control
1
histone
1
histone modification
1
narrow histone mark
Date released
92
August, 2021
11
April, 2019
6
May, 2019
5
March, 2020
3
February, 2020
3
July, 2019
2
February, 2021
1
February, 2023
1
October, 2019
Available data
98
tsv
18
bam
3
bedpe bed3+
3
hic
2
tagAlign
1
bed bedMethyl
1
bed narrowPeak
1
bigBed bedMethyl
1
bigWig
Organism
124
Homo sapiens
Biosample type
122
tissue
2
cell line
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
124
AMP
Genome assembly (visualization)
GRCh38
179
hg19
Lab
124
AMP-T2D consortium
organ_slims!
connective tissue
assembly!
GRCh38
BIOSAMPLE
ASSAY
124 results
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single cell RNA-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
WGBS
RRBS
tissue
heart left ventricle
18
7
1
1
2
1
heart right ventricle
17
2
1
1
right cardiac atrium
18
1
1
left cardiac atrium
18
aortic valve
4
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cell line
smooth muscle cell of the coronary artery
2
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