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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
total RNA-seq
88
ATAC-seq
84
ChIP-seq
1
Hi-C
Assay category
96
Transcription
88
DNA accessibility
84
DNA binding
1
3D chromatin structure
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
135
May, 2021
64
August, 2021
45
May, 2020
11
May, 2023
7
August, 2020
3
September, 2020
2
March, 2019
1
March, 2023
1
October, 2017
Available data
191
bigWig
180
bam
148
bed narrowPeak
96
tsv
84
tagAlign
64
xls
11
fastq
1
bed broadPeak
1
hic
Organism
269
Homo sapiens
Biosample type
191
primary cell
78
tissue
Organ
75
kidney
13
pancreas
10
epithelium
Project
180
T1D
78
AMP
10
HPAP
1
ITG
Genome assembly (visualization)
284
hg19
269
GRCh38
Lab
AMP-T2D consortium
180
Kyle Gaulton, UCSD
75
Katalin Susztak, Upenn
10
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
organ_slims!
connective tissue
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
269 results
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total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
primary cell
monocyte
53
84
pancreatic alpha cell
7
pancreatic beta cell
3
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 23 more…
tissue
kidney
75
islet of Langerhans
3
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