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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
8
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
67
DNA binding
9
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
61
transcription factor
21
RNA binding protein
15
recombinant protein
6
control
5
chromatin remodeller
3
other context
3
other post-translational modification
Date released
397
May, 2021
396
November, 2017
341
May, 2020
314
August, 2021
310
October, 2019
264
August, 2017
260
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
93
December, 2017
90
July, 2019
84
November, 2018
80
April, 2019
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
41
September, 2018
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
19
April, 2020
18
October, 2017
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
84
fastq
83
bam
77
bigWig
70
bed narrowPeak
70
bigBed narrowPeak
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
84
Homo sapiens
Biosample type
58
cell line
25
tissue
1
primary cell
Organ
50
liver
15
blood
15
bodily fluid
9
spleen
7
pancreas
2
brain
1
adipose tissue
connective tissue
Project
84
AMP
Genome assembly (visualization)
76
GRCh38
68
hg19
Lab
84
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
3
inconsistent control read length
2
inconsistent control run_type
organ_slims!
connective tissue
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
84 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
42
1
GM12878
15
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
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primary cell
pancreatic cell
1
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