Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
214
ChIP-seq
31
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
214
DNA binding
36
DNA accessibility
24
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
183
histone
183
histone modification
116
narrow histone mark
67
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
29
June, 2019
28
May, 2019
17
July, 2019
12
February, 2020
12
October, 2017
2
March, 2020
2
November, 2018
1
February, 2023
Available data
239
bam
217
bigWig
199
bed narrowPeak
123
bigBed narrowPeak
114
tagAlign
44
bed broadPeak
37
bigBed broadPeak
33
bed bed3+
26
tsv
17
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
280
Homo sapiens
Biosample type
261
tissue
19
primary cell
Organ
892
pancreas
778
liver
connective tissue
503
epithelium
479
adipose tissue
354
kidney
353
heart
282
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
280
AMP
Genome assembly (visualization)
213
GRCh38
159
hg19
Lab
280
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
missing controlled_by
organ_slims!
connective tissue
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
280 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
16
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
See all biosamples
Download