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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
791
ChIP-seq
575
total RNA-seq
243
ATAC-seq
176
DNase-seq
118
single cell RNA-seq
86
RNA microarray
23
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
8
snATAC-seq
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
791
DNA binding
707
Transcription
431
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
558
histone modification
557
histone
294
narrow histone mark
263
broad histone mark
163
control
72
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
240
October, 2019
228
August, 2021
227
August, 2017
193
May, 2020
162
June, 2019
120
July, 2018
115
May, 2019
101
February, 2021
82
November, 2017
80
April, 2019
76
February, 2023
67
July, 2019
66
May, 2022
51
October, 2018
48
December, 2017
39
May, 2021
39
November, 2019
35
March, 2020
25
November, 2018
23
February, 2020
22
October, 2017
14
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1407
bam
1249
bigWig
929
bed narrowPeak
619
tsv
551
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2086
Homo sapiens
Biosample type
2093
tissue
651
cell line
521
primary cell
297
in vitro differentiated cells
7
stem cell
Organ
connective tissue
488
adipose tissue
475
pancreas
361
liver
273
heart
265
brain
252
kidney
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2093
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1337
GRCh38
1271
hg19
Lab
1874
AMP-T2D consortium
142
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
25
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
2093 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
snATAC-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
68
291
57
1
4
3
1
1
1
4
liver
145
167
20
2
1
1
3
1
1
1
kidney
27
49
75
13
17
1
1
6
1
bone element
84
heart left ventricle
35
3
2
3
18
1
4
1
1
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