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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
ChIP-seq
Assay category
90
DNA binding
Target of assay
675
histone modification
674
histone
460
transcription factor
355
narrow histone mark
319
broad histone mark
276
control
90
RNA binding protein
89
recombinant protein
33
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
34
November, 2017
21
November, 2018
6
January, 2019
6
October, 2018
5
May, 2021
4
April, 2019
4
December, 2017
4
May, 2019
2
August, 2017
2
December, 2018
1
August, 2021
1
November, 2019
Available data
84
bam
82
bigWig
81
bed narrowPeak
78
bigBed narrowPeak
75
fastq
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
tar
Organism
90
Homo sapiens
Biosample type
65
cell line
18
tissue
primary cell
7
in vitro differentiated cells
Organ
58
liver
10
blood
10
bodily fluid
connective tissue
9
pancreas
5
adipose tissue
5
heart
3
blood vessel
3
epithelium
3
vasculature
1
artery
1
kidney
Project
90
AMP
Genome assembly (visualization)
81
hg19
77
GRCh38
Lab
84
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
organ_slims!
connective tissue
biosample_type!
primary cell
BIOSAMPLE
ASSAY
90 results
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Clear Filters
ChIP-seq
cell line
HepG2
54
GM12878
10
EndoC_BH1
1
tissue
body of pancreas
5
heart left ventricle
3
islet of Langerhans
2
ascending aorta
1
coronary artery
1
+ See 6 more…
in vitro differentiated cells
embryonic stem cell
5
hepatocyte
2
See all biosamples
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