Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
8
ATAC-seq
5
total RNA-seq
4
GRO-seq
4
Hi-C
4
pCHi-C
2
single cell RNA-seq
Assay category
59
DNA binding
8
DNA accessibility
7
Transcription
4
3D chromatin structure
Target of assay
25
control
22
histone
22
histone modification
12
transcription factor
11
broad histone mark
11
narrow histone mark
5
RNA binding protein
Date released
48
May, 2021
8
August, 2021
8
February, 2018
6
March, 2020
5
December, 2017
4
January, 2018
3
February, 2023
2
December, 2019
2
October, 2019
Available data
21
bam
17
fastq
12
bigWig
8
tagAlign
6
bedpe bed3+
4
hic
4
tsv
3
bed bedgraph
3
txt
2
bed narrowPeak
2
ibed
Organism
86
Homo sapiens
Biosample type
851
tissue
545
primary cell
198
cell line
86
in vitro differentiated cells
6
stem cell
Organ
connective tissue
8
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
86
AMP
Genome assembly (visualization)
224
hg19
GRCh38
4
hg18
Lab
47
Kyle Gaulton, UCSD
36
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
12
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
organ_slims!
connective tissue
assembly!
GRCh38
BIOSAMPLE
ASSAY
86 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
GRO-seq
Hi-C
pCHi-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
38
6
5
1
neural progenitor cell
8
cardiomyocytes (cardiac muscle cell)
2
2
2
pancreatic endoderm
5
1
Hepatic endoderm
2
+ See 11 more…
See all biosamples
Download