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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
total RNA-seq
72
ChIP-seq
17
ATAC-seq
Assay category
122
Transcription
72
DNA binding
17
DNA accessibility
Target of assay
53
histone
53
histone modification
28
narrow histone mark
25
broad histone mark
15
transcription factor
4
control
2
RNA binding protein
1
chromatin remodeller
Date released
83
May, 2021
38
December, 2017
31
February, 2018
30
August, 2021
18
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
211
bam
190
bigWig
122
tsv
85
bed narrowPeak
69
fastq
18
tagAlign
14
bigBed narrowPeak
12
bed bed3+
Organism
211
Homo sapiens
Biosample type
1339
tissue
504
primary cell
464
cell line
211
in vitro differentiated cells
3
stem cell
Organ
connective tissue
21
embryo
20
epithelium
14
liver
2
pancreas
1
heart
Project
211
AMP
Genome assembly (visualization)
224
hg19
211
GRCh38
4
hg18
Lab
211
AMP-T2D consortium
Audit category:
99
inconsistent ontology term
Audit category:
11
inconsistent control read length
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
211 results
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total RNA-seq
ChIP-seq
ATAC-seq
in vitro differentiated cells
cardiomyocytes
59
3
neural progenitor cell
7
13
10
cardiac precursors (cardiac muscle cell)
19
1
pancreatic endoderm
4
13
hepatocyte
14
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