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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
total RNA-seq
94
ChIP-seq
17
ATAC-seq
4
GRO-seq
4
Hi-C
4
pCHi-C
2
single cell RNA-seq
Assay category
124
Transcription
94
DNA binding
17
DNA accessibility
4
3D chromatin structure
Target of assay
55
histone
55
histone modification
29
narrow histone mark
26
broad histone mark
24
control
15
transcription factor
2
RNA binding protein
1
chromatin remodeller
Date released
84
May, 2021
43
December, 2017
39
February, 2018
38
August, 2021
18
February, 2021
8
March, 2020
6
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
Available data
232
bam
194
bigWig
126
tsv
86
fastq
85
bed narrowPeak
26
tagAlign
14
bigBed narrowPeak
12
bed bed3+
6
bedpe bed3+
4
hic
2
ibed
Organism
247
Homo sapiens
Biosample type
1878
tissue
615
cell line
486
primary cell
247
in vitro differentiated cells
7
stem cell
Organ
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
247
AMP
Genome assembly (visualization)
216
hg19
211
GRCh38
4
hg18
Lab
247
AMP-T2D consortium
47
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
110
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
247 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
Hi-C
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
neural progenitor cell
7
21
10
pancreatic endoderm
4
18
1
cardiac precursors (cardiac muscle cell)
19
1
1
hepatocyte
15
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