Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
124
ChIP-seq
25
ATAC-seq
4
GRO-seq
4
Hi-C
4
pCHi-C
2
single cell RNA-seq
Assay category
129
Transcription
124
DNA binding
25
DNA accessibility
4
3D chromatin structure
Target of assay
75
histone
75
histone modification
39
narrow histone mark
36
broad histone mark
29
control
27
transcription factor
RNA binding protein
1
chromatin remodeller
Date released
126
May, 2021
41
December, 2017
39
February, 2018
38
August, 2021
18
February, 2021
8
March, 2020
6
October, 2019
5
November, 2019
4
January, 2018
3
February, 2023
2
December, 2019
Available data
230
bam
200
bigWig
126
tsv
85
bed narrowPeak
84
fastq
26
tagAlign
12
bed bed3+
12
bigBed narrowPeak
6
bedpe bed3+
4
hic
3
bed bedgraph
3
txt
2
ibed
Organism
290
Homo sapiens
Biosample type
2172
tissue
1040
primary cell
597
cell line
290
in vitro differentiated cells
9
stem cell
Organ
connective tissue
29
embryo
22
epithelium
13
liver
3
pancreas
1
adipose tissue
1
heart
Project
290
AMP
Genome assembly (visualization)
222
hg19
209
GRCh38
4
hg18
Lab
245
AMP-T2D consortium
42
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
111
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
organ_slims!
connective tissue
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
290 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
Hi-C
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
7
35
6
1
neural progenitor cell
7
21
10
pancreatic endoderm
4
18
1
cardiac precursors (cardiac muscle cell)
19
1
1
+ See 24 more…
See all biosamples
Download