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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
267
ChIP-seq
237
total RNA-seq
198
ATAC-seq
183
single cell RNA-seq
56
snATAC-seq
25
DNase-seq
15
pCHi-C
9
Hi-C
1
FAIRE-seq
1
small RNA-seq
Assay category
421
Transcription
280
DNA accessibility
267
DNA binding
DNA methylation
9
3D chromatin structure
Target of assay
229
histone
229
histone modification
118
broad histone mark
111
narrow histone mark
32
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
204
May, 2021
147
May, 2020
93
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
58
August, 2017
46
July, 2018
41
April, 2018
39
February, 2021
38
June, 2019
34
October, 2019
15
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
581
bigWig
573
bam
399
fastq
278
bed narrowPeak
249
tsv
112
zippedFastqFolder
100
tagAlign
94
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
29
bed bed3+
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
tar
Organism
992
Homo sapiens
Biosample type
2158
tissue
992
primary cell
661
cell line
297
in vitro differentiated cells
9
stem cell
Organ
353
epithelium
299
pancreas
connective tissue
36
vasculature
33
kidney
31
blood vessel
22
vein
20
brain
13
liver
13
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
511
AMP
277
HPAP
203
T1D
1
ITG
Genome assembly (visualization)
585
hg19
504
GRCh38
Lab
476
AMP-T2D consortium
277
Klaus Kaestner, Upenn
238
Kyle Gaulton, UCSD
1
ITG
Audit category:
40
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
connective tissue
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
992 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
54
15
1
Langerhans cell
85
48
pancreatic alpha cell
13
52
35
12
1
pancreatic beta cell
13
21
23
12
1
CD8-positive, alpha-beta T cell
33
4
2
1
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