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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
237
total RNA-seq
219
ChIP-seq
183
single cell RNA-seq
176
ATAC-seq
56
snATAC-seq
47
WGBS
15
pCHi-C
9
Hi-C
9
RRBS
2
DNase-seq
1
DNAme array
1
small RNA-seq
Assay category
421
Transcription
234
DNA accessibility
219
DNA binding
57
DNA methylation
9
3D chromatin structure
Target of assay
190
histone
190
histone modification
101
broad histone mark
89
narrow histone mark
32
control
Date released
205
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2018
59
September, 2020
46
July, 2018
45
February, 2021
41
April, 2018
40
August, 2017
23
July, 2019
21
October, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
June, 2019
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
581
bigWig
573
bam
406
fastq
278
bed narrowPeak
255
tsv
153
zippedFastqFolder
100
tagAlign
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
tar
Organism
955
Homo sapiens
Biosample type
1639
tissue
955
primary cell
307
cell line
283
in vitro differentiated cells
9
stem cell
Organ
345
epithelium
324
pancreas
connective tissue
20
kidney
16
vasculature
14
blood vessel
12
liver
10
brain
9
vein
8
blood
8
bodily fluid
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
427
AMP
324
HPAP
203
T1D
1
ITG
Genome assembly (visualization)
506
hg19
414
GRCh38
Lab
392
AMP-T2D consortium
324
Klaus Kaestner, Upenn
238
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
28
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
organ_slims!
connective tissue
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
955 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
DNAme array
small RNA-seq
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
13
12
29
31
1
Langerhans cell
85
48
pancreatic beta cell
21
13
12
16
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
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