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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
237
total RNA-seq
214
ChIP-seq
195
ATAC-seq
183
single cell RNA-seq
56
snATAC-seq
47
WGBS
23
DNase-seq
15
pCHi-C
9
Hi-C
8
RRBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
421
Transcription
275
DNA accessibility
214
DNA binding
56
DNA methylation
9
3D chromatin structure
Target of assay
191
histone
191
histone modification
102
broad histone mark
89
narrow histone mark
19
control
7
RNA binding protein
7
transcription factor
Date released
205
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
August, 2017
59
September, 2020
46
July, 2018
45
February, 2021
41
April, 2018
38
June, 2019
34
October, 2019
23
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
535
bigWig
515
bam
348
fastq
255
tsv
245
bed narrowPeak
153
zippedFastqFolder
88
tagAlign
75
bigBed narrowPeak
29
bed bed3+
29
bed broadPeak
29
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
tar
Organism
990
Homo sapiens
Biosample type
1963
tissue
990
primary cell
662
cell line
297
in vitro differentiated cells
9
stem cell
Organ
377
epithelium
305
pancreas
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
462
AMP
324
HPAP
203
T1D
1
ITG
Genome assembly (visualization)
547
hg19
462
GRCh38
Lab
427
AMP-T2D consortium
324
Klaus Kaestner, Upenn
238
Kyle Gaulton, UCSD
1
ITG
Audit category:
41
inconsistent ontology term
31
audit script error
Audit category:
32
missing controlled_by
organ_slims!
connective tissue
month_released!
August, 2017
BIOSAMPLE
ASSAY
990 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
54
85
15
1
1
Langerhans cell
85
48
pancreatic alpha cell
52
34
12
31
1
pancreatic beta cell
21
22
12
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
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