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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
229
ChIP-seq
Assay category
229
DNA binding
Target of assay
229
histone
229
histone modification
118
broad histone mark
111
narrow histone mark
32
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
118
May, 2021
38
August, 2017
32
September, 2018
21
October, 2019
11
June, 2019
3
August, 2021
3
May, 2019
3
November, 2017
Available data
222
bigWig
208
bed narrowPeak
195
bam
98
tagAlign
73
fastq
39
bigBed narrowPeak
16
bed broadPeak
16
bigBed broadPeak
3
bed bed3+
Organism
229
Homo sapiens
Biosample type
559
tissue
229
primary cell
75
in vitro differentiated cells
38
cell line
2
stem cell
Organ
66
epithelium
58
pancreas
17
vasculature
16
blood vessel
15
vein
10
kidney
connective tissue
8
musculature of body
3
brain
3
liver
2
heart
1
eye
Project
145
AMP
84
T1D
Genome assembly (visualization)
222
hg19
190
GRCh38
Lab
115
AMP-T2D consortium
114
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
229 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
30
pancreatic endocrine cell
23
endothelial cell of umbilical vein
15
pancreatic ductal cell
13
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