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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
836
ChIP-seq
254
ATAC-seq
176
DNase-seq
86
RNA microarray
28
snATAC-seq
27
pCHi-C
21
WGBS
16
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
GRO-seq
Assay category
836
DNA binding
Transcription
462
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
597
histone modification
596
histone
312
narrow histone mark
284
broad histone mark
164
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
218
October, 2019
162
June, 2019
138
August, 2017
115
May, 2019
95
February, 2021
82
November, 2017
80
April, 2019
80
February, 2023
72
August, 2021
51
December, 2017
51
October, 2018
50
May, 2020
40
May, 2024
39
May, 2022
33
March, 2020
30
July, 2019
25
November, 2018
22
October, 2017
20
November, 2019
11
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
973
bed narrowPeak
943
bam
831
bigWig
551
bigBed narrowPeak
235
fastq
230
tagAlign
210
bed broadPeak
202
bed bed3+
174
bigBed broadPeak
85
txt
64
xls
28
tsv
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1459
Homo sapiens
Biosample type
1460
tissue
628
primary cell
547
cell line
168
in vitro differentiated cells
7
stem cell
Organ
244
brain
214
pancreas
204
heart
187
liver
184
kidney
120
blood vessel
120
vasculature
115
limb
96
bone element
connective tissue
89
adipose tissue
75
musculature of body
69
artery
38
nerve
37
eye
25
spleen
18
ureter
13
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1433
AMP
24
T1D
10
LungMap
Genome assembly (visualization)
919
GRCh38
813
hg19
1
hg18
Lab
1264
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
14
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
organ_slims!
connective tissue
assay_slims!
Transcription
BIOSAMPLE
ASSAY
1467 results
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table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
GRO-seq
tissue
liver
145
20
2
1
3
1
1
islet of Langerhans
70
68
1
7
4
3
1
1
4
kidney
27
75
13
6
1
1
1
bone element
84
heart left ventricle
35
2
3
1
4
1
1
+ See 152 more…
stem cell
hESC
3
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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