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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
793
ChIP-seq
582
total RNA-seq
174
single cell RNA-seq
86
RNA microarray
24
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
793
DNA binding
770
Transcription
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
560
histone modification
559
histone
296
narrow histone mark
263
broad histone mark
163
control
72
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
223
August, 2017
221
October, 2019
193
May, 2020
158
August, 2021
120
July, 2018
115
May, 2019
93
February, 2021
82
November, 2017
80
April, 2019
59
July, 2019
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
37
March, 2020
27
May, 2022
23
February, 2020
20
November, 2019
16
November, 2018
15
October, 2017
14
February, 2023
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
November, 2020
3
December, 2019
3
May, 2023
1
March, 2019
Available data
1169
bam
1033
bigWig
618
tsv
548
bed narrowPeak
371
bigBed narrowPeak
296
fastq
230
tagAlign
156
txt
34
bed broadPeak
24
bed bed3+
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
1721
Homo sapiens
Biosample type
1728
tissue
769
primary cell
631
cell line
272
in vitro differentiated cells
9
stem cell
Organ
connective tissue
480
adipose tissue
423
pancreas
336
liver
233
brain
207
heart
149
kidney
146
bone element
90
blood vessel
90
vasculature
78
limb
48
musculature of body
40
nerve
32
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1662
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
1009
GRCh38
993
hg19
Lab
1571
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
connective tissue
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
1728 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
70
298
4
3
1
4
liver
145
167
1
1
3
1
1
1
kidney
27
49
64
1
1
bone element
84
heart left ventricle
35
3
18
1
4
1
1
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