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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
532
ChIP-seq
449
total RNA-seq
175
DNase-seq
155
ATAC-seq
14
WGBS
14
small RNA-seq
Assay category
532
DNA binding
463
Transcription
330
DNA accessibility
14
DNA methylation
Target of assay
458
histone modification
457
histone
235
narrow histone mark
222
broad histone mark
71
transcription factor
17
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
162
June, 2019
162
May, 2020
161
October, 2019
142
August, 2017
116
July, 2018
92
May, 2019
64
April, 2019
64
August, 2021
57
November, 2017
51
July, 2019
40
October, 2018
38
May, 2021
38
November, 2019
36
December, 2017
35
February, 2023
21
November, 2018
13
October, 2017
11
May, 2023
9
March, 2020
8
February, 2021
6
April, 2018
6
January, 2019
3
December, 2018
2
March, 2019
2
September, 2017
Available data
1224
bam
1194
bigWig
832
bed narrowPeak
546
bigBed narrowPeak
463
tsv
257
fastq
198
bed bed3+
189
bed broadPeak
174
bigBed broadPeak
116
tagAlign
64
xls
14
bed bedMethyl
14
bigBed bedMethyl
1
tagAlign bed3+
Organism
1333
Homo sapiens
Biosample type
1339
tissue
504
primary cell
464
cell line
211
in vitro differentiated cells
3
stem cell
Organ
connective tissue
422
adipose tissue
386
pancreas
238
liver
203
brain
165
kidney
151
heart
105
blood vessel
105
vasculature
96
limb
66
bone element
62
artery
42
musculature of body
31
nerve
18
ureter
16
spleen
8
skeleton
3
eye
1
pituitary gland
Project
1337
AMP
2
T1D
Genome assembly (visualization)
1339
GRCh38
1273
hg19
Lab
1261
AMP-T2D consortium
75
Katalin Susztak, Upenn
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
1339 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
tissue
islet of Langerhans
25
266
1
22
liver
75
147
2
1
kidney
20
13
75
coronary artery
3
2
36
body of pancreas
26
2
4
4
2
2
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