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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
759
ChIP-seq
582
total RNA-seq
252
ATAC-seq
174
single cell RNA-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
770
Transcription
759
DNA binding
286
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
526
histone modification
525
histone
282
narrow histone mark
243
broad histone mark
163
control
72
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
236
October, 2019
228
August, 2021
202
August, 2017
193
May, 2020
120
July, 2018
115
May, 2019
101
February, 2021
94
February, 2023
80
April, 2019
76
November, 2017
67
July, 2019
66
May, 2022
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
39
March, 2020
39
November, 2019
23
February, 2020
19
April, 2020
18
October, 2017
17
November, 2018
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1409
bam
1251
bigWig
931
bed narrowPeak
619
tsv
551
bigBed narrowPeak
334
fastq
230
tagAlign
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1978
Homo sapiens
Biosample type
1980
tissue
1006
primary cell
603
cell line
297
in vitro differentiated cells
9
stem cell
Organ
connective tissue
485
adipose tissue
485
pancreas
358
liver
246
heart
231
kidney
229
brain
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
41
nerve
37
musculature of body
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1883
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1150
GRCh38
1080
hg19
Lab
1670
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
12
missing controlled_by
Audit category:
6
inconsistent control read length
organ_slims!
connective tissue
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
1980 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
64
298
66
7
4
3
1
1
4
1
liver
145
167
20
1
1
3
1
1
1
kidney
27
49
75
64
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
1
4
1
1
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