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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
678
ChIP-seq
582
total RNA-seq
254
ATAC-seq
176
DNase-seq
174
single cell RNA-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
770
Transcription
678
DNA binding
462
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
471
histone modification
470
histone
263
narrow histone mark
207
broad histone mark
141
control
68
transcription factor
14
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
240
October, 2019
228
August, 2021
227
August, 2017
193
May, 2020
162
June, 2019
120
July, 2018
May, 2019
101
February, 2021
94
February, 2023
82
November, 2017
80
April, 2019
67
July, 2019
66
May, 2022
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
39
March, 2020
39
November, 2019
25
November, 2018
23
February, 2020
22
October, 2017
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1294
bam
1158
bigWig
838
bed narrowPeak
619
tsv
458
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2067
Homo sapiens
Biosample type
2075
tissue
1044
primary cell
662
cell line
297
in vitro differentiated cells
9
stem cell
Organ
connective tissue
503
pancreas
488
adipose tissue
361
liver
299
kidney
252
heart
237
brain
158
bone element
115
limb
83
blood vessel
83
vasculature
75
musculature of body
68
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1978
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1247
GRCh38
1180
hg19
Lab
1763
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
connective tissue
month_released!
May, 2019
BIOSAMPLE
ASSAY
2075 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
70
298
68
1
7
4
3
1
1
4
liver
145
167
20
2
1
1
3
1
1
1
kidney
27
49
75
13
64
6
1
1
1
bone element
84
heart left ventricle
35
3
2
3
18
1
4
1
1
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