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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
WGBS
14
RRBS
1
DNAme array
Assay category
1539
DNA binding
1348
Transcription
783
DNA accessibility
81
DNA methylation
33
3D chromatin structure
1
DNA sequencing
Date released
41
May, 2022
26
July, 2019
August, 2017
7
November, 2018
6
February, 2021
1
May, 2021
Available data
41
zippedFastqFolder
29
bed bedMethyl
29
bigBed bedMethyl
16
bam
15
bigWig
13
fastq
6
tsv
Organism
81
Homo sapiens
Biosample type
56
primary cell
24
tissue
1
cell line
Organ
53
epithelium
53
pancreas
10
heart
4
kidney
3
liver
3
vasculature
2
blood vessel
2
brain
2
musculature of body
2
spleen
connective tissue
1
eye
1
limb
1
pericardium
Project
47
HPAP
34
AMP
Genome assembly (visualization)
15
GRCh38
14
hg19
Lab
47
Klaus Kaestner, Upenn
34
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
connective tissue
files.file_type!
bed bed3
month_released!
August, 2017
BIOSAMPLE
ASSAY
81 results
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WGBS
RRBS
DNAme array
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
+ See 6 more…
tissue
heart left ventricle
4
1
pancreas
2
1
aorta
2
body of pancreas
2
heart right ventricle
2
+ See 9 more…
cell line
HepG2
1
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