Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1678
ChIP-seq
1059
total RNA-seq
506
ATAC-seq
359
single cell RNA-seq
203
DNase-seq
86
RNA microarray
84
snATAC-seq
69
WGBS
50
pCHi-C
20
RRBS
15
small RNA-seq
13
Hi-C
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
13
3D chromatin structure
Date released
7
July, 2019
2
October, 2019
1
August, 2021
1
December, 2018
1
March, 2019
1
March, 2023
Available data
23
hic
bedpe bed3+
4
bed bed3+
4
bigWig
4
hdf5
3
cool
1
bedpe
1
fastq
Organism
13
Homo sapiens
Biosample type
6
tissue
5
primary cell
2
cell line
Organ
4
limb
4
musculature of body
3
blood vessel
3
brain
3
epithelium
3
vasculature
2
liver
2
pancreas
connective tissue
1
kidney
1
vein
Project
12
AMP
1
ITG
Genome assembly (visualization)
7
hg19
2
GRCh38
Lab
10
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
1
audit script error
Audit category:
1
inconsistent assembly
organ_slims!
connective tissue
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
13 results
search-icon
table-tab-icon
Clear Filters
Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
1
kidney
1
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
chondrocytes
1
endothelial cell of hepatic sinusoid
1
endothelial cell of umbilical vein
1
cell line
HepG2
1
Panc1
1
Download