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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
248
ChIP-seq
237
total RNA-seq
198
ATAC-seq
183
single cell RNA-seq
56
snATAC-seq
47
WGBS
15
pCHi-C
9
Hi-C
6
DNase-seq
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
421
Transcription
261
DNA accessibility
248
DNA binding
48
DNA methylation
9
3D chromatin structure
Target of assay
218
histone
218
histone modification
114
broad histone mark
104
narrow histone mark
27
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
58
August, 2017
46
July, 2018
45
February, 2021
41
April, 2018
June, 2019
34
October, 2019
15
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
548
bigWig
535
bam
406
fastq
255
tsv
245
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
61
bigBed narrowPeak
24
bed broadPeak
24
bigBed broadPeak
10
bed bed3+
9
bed bedMethyl
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
tar
Organism
1002
Homo sapiens
Biosample type
2045
tissue
1002
primary cell
661
cell line
297
in vitro differentiated cells
9
stem cell
Organ
380
epithelium
346
pancreas
32
vasculature
29
blood vessel
22
vein
connective tissue
20
kidney
15
brain
11
liver
8
blood
8
bodily fluid
4
heart
2
adipose tissue
2
artery
2
musculature of body
1
bone element
1
bone marrow
1
pericardium
Project
474
AMP
324
HPAP
203
T1D
1
ITG
Genome assembly (visualization)
558
hg19
471
GRCh38
Lab
439
AMP-T2D consortium
324
Klaus Kaestner, Upenn
238
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
27
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
connective tissue
files.file_type!
bigBed bedMethyl
month_released!
June, 2019
BIOSAMPLE
ASSAY
1002 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
DNase-seq
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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